ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAGATGTCG miRNA* GCGTGCTTGGCGAGCTCGCCG mismatches: 3 bulges: 0 |
pre-miRNA
CCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGACGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGG
CAAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAC
dot-bracket secondary structure
...(((..((((((((..((((.(((((((((((.((((..(((((.(((((((.(((((......))))).))..))))).))))).(((((.(((...
...)))))))).)))).))))))))))).))))..))))))))..)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGACGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGG
CAAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAC
dot-bracket secondary structure
...(((..((((((((..((((.(((((((((((.((((..(((((.(((((((.(((((......))))).))..))))).))))).(((((.(((...
...)))))))).)))).))))))))))).))))..))))))))..)))..
SIMILARITIES| miRBase no hits PMRD osa-miRf10144-akr: 1e-59 microPC no hits | UniProt sp|Q6ZBP3|H2B2_ORYSJ: 3e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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