ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIRf627
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGAGAAGGTTCTTTGACCG miRNA* GTCAAAGGAGTTATGATGG mismatches: 4 bulges: 2 |
pre-miRNA
CAAGTCTCAGAAGTCAAAGGAGTTATGATGGAANACATTGAGAAGGTTCTTTGACCGTGTGAGAAG
dot-bracket secondary structure
....(((((...(((((((((.((.(((((.....))))).))...)))))))))....)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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CAAGTCTCAGAAGTCAAAGGAGTTATGATGGAANACATTGAGAAGGTTCTTTGACCGTGTGAGAAG
dot-bracket secondary structure
....(((((...(((((((((.((.(((((.....))))).))...)))))))))....)))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record
