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ABOUT THIS RECORD
ID:
MNEST002483
species:
Saccharum officinarum
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGGCTTAATAGATTCGTCT
miRNA*
ACGAATCTTTTAAGCCTAATT
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTAAATATAGACGGAAAAAAACTAATTGCACAGTTTGGTTGGAAATCACGAG
ACGAATCTTTTAAGCCTAATT
AGTCCATGATTAGCCTTAAGTGCTACA
ATAACACATATGTGCTAATGATGGCTTAA
TTAGGCTTAATAGATTCGTCT
CGCAATTTCCAGGCAAGTTATGTAATTAGTTTTTTAATTAGTATCCGAA
dot-bracket secondary structure
...........(((((((((((((((((((.((((((.((((((((..((((
((((((((.((((((((((((
((.((((.((((((..((.(((.((..
.)).))).))...)))))).)))).))))
)))))))))).))))))))))
))..)))))))).)))))).)))))))))))))))........))))..
SIMILARITIES
miRBase
osa-MIR2124e
:
0.000000000003
PMRD
osa-miRf10240-akr
:
3e-30
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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