ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGTTCAAGG mismatches: 3 bulges: 0 |
pre-miRNA
GGGGAAGATATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGCGATTTAAGGATGATTCGTGCATGGCATGTGTAGTTTTT
ATTCCTTGAATCTGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATGATATCGCGG
dot-bracket secondary structure
......((((((((((((((.((...((((.((((((..(((((((((.(((((((((....((((((((((.((..(((((...))))).......)).
..)))))))))).))))))))).)))))))))..)))))).)))))))))))))))).....))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGGGAAGATATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGCGATTTAAGGATGATTCGTGCATGGCATGTGTAGTTTTT
ATTCCTTGAATCTGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATGATATCGCGG
dot-bracket secondary structure
......((((((((((((((.((...((((.((((((..(((((((((.(((((((((....((((((((((.((..(((((...))))).......)).
..)))))))))).))))))))).)))))))))..)))))).)))))))))))))))).....))))....
SIMILARITIES| miRBase sbi-MIR166a: 3e-33 PMRD sbi-miR166a: 3e-33 microPC miR166: 2e-31 | UniProt no hits RFAM mir-166: 6e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
