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ABOUT THIS RECORD

ID: MNEST002496
species: Saccharum officinarum
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCC

miRNA*
AATGTTGTCTGGTTCAAGG

mismatches: 3
bulges: 0

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pre-miRNA
GGGGAAGATATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGCGATTTAAGGATGATTCGTGCATGGCATGTGTAGTTTTT
ATTCCTTGAATCTGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATGATATCGCGG


dot-bracket secondary structure
......((((((((((((((.((...((((.((((((..(((((((((.(((((((((....((((((((((.((..(((((...))))).......)).
..)))))))))).))))))))).)))))))))..)))))).)))))))))))))))).....))))....



SIMILARITIES
miRBase sbi-MIR166a: 3e-33

PMRD sbi-miR166a: 3e-33

microPC miR166: 2e-31
UniProt no hits

RFAM mir-166: 6e-38
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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