ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCACCAAGTGAAT miRNA* TCGCTTGGTGCAGATCGGGAC mismatches: 3 bulges: 0 |
pre-miRNA
GCCGCCGCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGCA
GCCA
dot-bracket secondary structure
...((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))).
))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCGCCGCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGCA
GCCA
dot-bracket secondary structure
...((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))).
))..
SIMILARITIES| miRBase sof-MIR168a: 2e-54 PMRD sof-miR168a: 2e-54 microPC miR168: 4e-31 | UniProt no hits RFAM MIR168: 1e-47 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST046638) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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