ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGGCAGATCGGGACC miRNA* TCCCGCCTTGCACCAAGTGAAT mismatches: 3 bulges: 1 |
pre-miRNA
CCCGCCCCGCGCCGTCTGGGCTCGCTTGGGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGCA
GCCAT
dot-bracket secondary structure
........(((((((((((..((((((((((((..(((((.(((...((((.....)))).))).)))))..)))).)))))))).)))))..)))))).
.....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCCGCCCCGCGCCGTCTGGGCTCGCTTGGGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGCA
GCCAT
dot-bracket secondary structure
........(((((((((((..((((((((((((..(((((.(((...((((.....)))).))).)))))..)))).)))))))).)))))..)))))).
.....
SIMILARITIES| miRBase sof-MIR168b: 9e-54 PMRD sof-miR168b: 9e-54 microPC miR168: 2e-30 | UniProt no hits RFAM MIR168: 3e-35 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST046702) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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