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ABOUT THIS RECORD

ID: MNEST002500
species: Saccharum officinarum
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGATCGGGAC

miRNA*
 CCCGCCTTGCACCAAGTGAAT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CGCCGCCGCGCCGCCTCAGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGC
AGCAAT

dot-bracket secondary structure
....((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).))))))
.))...


SIMILARITIES
miRBase sof-MIR168a: 9e-51

PMRD sof-miR168a: 9e-51

microPC miR168: 4e-31		UniProt no hits

RFAM MIR168: 2e-45		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST046638)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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