ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGGCTTAAAAGATTCGTCT miRNA* ACAAATTTATTAAGCCTAATT mismatches: 2 bulges: 0 |
pre-miRNA
AGTAAACCGTGAGACAAATTTATTAAGCCTAATTAATCCGTCATTAGCACATGTGTTAATGTAGCACTTTATTGTTAAATCATGAACTAATTAGGCTTAA
AAGATTCGTCTCGCAAAGTAG
dot-bracket secondary structure
........(((((((.(((((.(((((((((((((.....(((((((((...((((((...)))))).....)))))....))))..)))))))))))))
.))))).))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGTAAACCGTGAGACAAATTTATTAAGCCTAATTAATCCGTCATTAGCACATGTGTTAATGTAGCACTTTATTGTTAAATCATGAACTAATTAGGCTTAA
AAGATTCGTCTCGCAAAGTAG
dot-bracket secondary structure
........(((((((.(((((.(((((((((((((.....(((((((((...((((((...)))))).....)))))....))))..)))))))))))))
.))))).))))))).......
SIMILARITIES| miRBase osa-MIR442: 5e-25 PMRD osa-miR442: 5e-25 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
