ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTAAAAGATTCGTCTCGCAA miRNA* GTGAGACAAATTTATTAAGCC mismatches: 4 bulges: 0 |
pre-miRNA
AAAAAATAAATTACAGAATCCGTCAGTAAACCGTGAGACAAATTTATTAAGCCTAATTAATCCGTCATTAGCACATGTGTTAATGTAGCACTTTATTGTT
AAATCATGAACTAATTAGGCTTAAAAGATTCGTCTCGCAAAGTAGTCACAATCTGTGCAATTAGTTATT
dot-bracket secondary structure
..........((((.((.....)).))))...(((((((.(((((.(((((((((((((.....(((((((((...((((((...)))))).....))))
)....))))..))))))))))))).))))).)))))))......(.((((...)))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAAAATAAATTACAGAATCCGTCAGTAAACCGTGAGACAAATTTATTAAGCCTAATTAATCCGTCATTAGCACATGTGTTAATGTAGCACTTTATTGTT
AAATCATGAACTAATTAGGCTTAAAAGATTCGTCTCGCAAAGTAGTCACAATCTGTGCAATTAGTTATT
dot-bracket secondary structure
..........((((.((.....)).))))...(((((((.(((((.(((((((((((((.....(((((((((...((((((...)))))).....))))
)....))))..))))))))))))).))))).)))))))......(.((((...)))))...........
SIMILARITIES| miRBase osa-MIR442: 8e-34 PMRD osa-miR442: 8e-34 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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