ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR2504
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACCAAGTTTATAGTAAAT miRNA* TTATATAAATTTAGTCAAAG mismatches: 2 bulges: 1 |
pre-miRNA
CTGACTCTAGTTTGACCAAGTTTATAGTAAATAGTATTAACATTTATGTCTCTAAATAAATTTATTAAAAAATATATTCTATAACTAATATAATGATACT
TATTTTGTATCATAAATATTAGTATTTTTTATATAAATTTAGTCAAAGTTCAAACT
dot-bracket secondary structure
..........((((((.(((((((((.((((.((((((((.(((((((.....((((((..((((((.......................))))))...)
))))).....))))))).)))))))).))))))))))))).)))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTGACTCTAGTTTGACCAAGTTTATAGTAAATAGTATTAACATTTATGTCTCTAAATAAATTTATTAAAAAATATATTCTATAACTAATATAATGATACT
TATTTTGTATCATAAATATTAGTATTTTTTATATAAATTTAGTCAAAGTTCAAACT
dot-bracket secondary structure
..........((((((.(((((((((.((((.((((((((.(((((((.....((((((..((((((.......................))))))...)
))))).....))))))).)))))))).))))))))))))).)))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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