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ABOUT THIS RECORD

ID: MNEST002516
species: Saccharum officinarum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGGACGGAGGGAGTAGT

miRNA*
 TACTACCTCCGTCCCAAAAAG

mismatches: 3
bulges: 0
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pre-miRNA
 CTTCCTTTAGTGTTCTACAAACATACTACCTCCGTCCCAAAAAGAATGTAACCCTCGCTTCCCGAGGAGTCAAAGATTCTTAACTTTGACTAAATACAAA
TAAAAACATATTGATGCTTATGATGTGTAATAAGTATAATTGGATTAGTTATGAAATATAGTTTCATAATAAACCTAATTAGAGATTAAAATGTAGATAA
TATCATCTATAAACTTGGTCAAATTTAAAGATTCTTTGACTCCTCGGAAATCGAGATTTACATGTTTTTTGGGACGGAGGGAGTAGTAGATTCACCCAGC
AGAAAAA

dot-bracket secondary structure
.........(((.(((((.....((((.((((((((((((((((.((((((..((((.((.(((((((((((((((.((((((.(((((((((.((((..
((.((.(((....))).)).))...)))).(((...(((((((.((.((((((((((...)))))))))).)).)))))))....)))...(((((((..
....)))))))...))))))))).)).)))).))))))))))))))).)).))))..)))))).)))))))))))))))).)))))))))..))).....
.......


SIMILARITIES
miRBase ssp-MIR1128: 7e-156

PMRD osa-miRf10155-akr: 0.00002

microPC miR1439: 0.001		UniProt no hits

RFAM MIR1122: 0.00002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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