miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002522
species: Saccharum officinarum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATACTCCCTCCATCCCAAATT

miRNA*
 TTTAGAATGGAGGGAGTACTT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GTCCTTACGTTATACTCCCTCCATCCCAAATTATAAGGCATTATAAGAATCTTGGAGAGTCAAAGGATCTCAAGTTTGACCAAATTTATATGATAAGATA
ATAATATTTATGACACCAATTAAGTATCATTAGATTCTTTATTAATTATATTTTTATAGTATACTTATTTGATGTTATAAATTTTTATAATTTTCTCTAT
AATTTTGGTCAAACTTAAGATGCTTTGACTCTCCAAGATTCTTGGAATGCCTTATAATTTAGAATGGAGGGAGTACTTGTCATTGT

dot-bracket secondary structure
......(((...((((((((((((...(((((((((((((((.((((((((((((((((((((((.((((.(((((((((((((.(((((.((.(((((.
((((.((((((((((.(((.(((((((.((((.......(((.....)))......))))))))))).))).))))))))))..)))).))))).)))))
)).))))))))))))).)))).)))))))))))))))))))))).)))))))))))))))...))))))))))))..)))......


SIMILARITIES
miRBase no hits

PMRD osa-miRf10322-akr: 0.001

microPC no hits		UniProt no hits

RFAM MIR1122: 0.00000007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;