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ABOUT THIS RECORD

ID: MNEST002523
species: Saccharum officinarum
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCAC

miRNA*
 GCTCACTTCTCTCTCTGTCAGC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 GTGGGGTGGAGAAGAGGTGGAGGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGAACGATCGAGAGGTTCATGCTCGAAGCTATGC
GTGCTCACTTCTCTCTCTGTCAGCCGTTAGAACTCTCTCTCGAT

dot-bracket secondary structure
.......(((((.(((.(((.(((((((((((((((((((((((.((((((....(((..((((((......(((....)))))))))..))))))))).
)))))))).))))).)))))))))).)))...))))))))....


SIMILARITIES
miRBase sof-MIR156: 7e-74

PMRD zma-miR156c: 2e-49

microPC miR156: 1e-50		UniProt no hits

RFAM mir-156: 2e-22		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST046235)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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