ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: miR167g
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCATGCTGTAGTTTCATCT miRNA* GTGAAGCTGCCAGCATGATCTG mismatches: 1 bulges: 1 |
pre-miRNA
GGGTAGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTC
ACGGATCGATGAATCCAGGATGAGGGGAGGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACATCGAA
dot-bracket secondary structure
........((((.((((.(((.(((((((((((.((((((((((((((..((((.....((..........))..))))((((.(((((((((...((((
..((((......))))..)))).))))))))).))..)).))))))))))))))))))))))))).))).))))..))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGGTAGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTC
ACGGATCGATGAATCCAGGATGAGGGGAGGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACATCGAA
dot-bracket secondary structure
........((((.((((.(((.(((((((((((.((((((((((((((..((((.....((..........))..))))((((.(((((((((...((((
..((((......))))..)))).))))))))).))..)).))))))))))))))))))))))))).))).))))..))))......
SIMILARITIES| miRBase sof-MIR167b: 6e-81 PMRD sof-miR167b: 6e-81 microPC miR167: 1e-72 | UniProt no hits RFAM MIR167_1: 2e-16 | most similar mature miRNAs |
Identical with: ssp-MIR167b from miRBase (MNEST042469) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
