ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATGCTGTAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
TTAGAGAGGGTAGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCT
GACTGTCACGGATCGATGAATCCAGGATGAGGGGAGGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACATCGAAAACCCTA
dot-bracket secondary structure
......(((((....((((.((((.(((.(((((((((((.((((((((((((((..((((.....((..........))..))))((((.(((((((((
...((((..((((......))))..)))).))))))))).))..)).))))))))))))))))))))))))).))).))))..)))).......))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTAGAGAGGGTAGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCT
GACTGTCACGGATCGATGAATCCAGGATGAGGGGAGGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACATCGAAAACCCTA
dot-bracket secondary structure
......(((((....((((.((((.(((.(((((((((((.((((((((((((((..((((.....((..........))..))))((((.(((((((((
...((((..((((......))))..)))).))))))))).))..)).))))))))))))))))))))))))).))).))))..)))).......))))).
SIMILARITIES| miRBase sof-MIR167b: 7e-81 PMRD sof-miR167b: 7e-81 microPC miR167: 1e-72 | UniProt no hits RFAM MIR167_1: 2e-16 | most similar mature miRNAs |
Identical with: ssp-MIR167b from miRBase (MNEST042469) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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