ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR2504
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGATCAAGTTTATAGAAAAA miRNA* TTTCTAAAAACTTGATCAAAG mismatches: 1 bulges: 0 |
pre-miRNA
TACTAAACTTCAGCTTTGTCCCAAGTCAAACCTCTCTAACTTTGATCAAGTTTATAGAAAAATGCACCAAAATCTAGAATATCAAACTAGTTCCATTAAA
TTCTCCATGAAATATATTTTGATAATGCATTTATTGAACTTGTAGATGATAATATATTTTTTCTAAAAACTTGATCAAAGTTAGAGAAGTTTGACTTANG
ACAAAGCTAAAGTGAACA
dot-bracket secondary structure
......((((.(((((((((..(((((((((.(((((((((((((((((((((.((((((((.........(((((.(((((((((.((.(((.......
........)))...)).)))))))...............)).)))))..........)))))))).))))))))))))))))))))).)))))))))..)
)))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TACTAAACTTCAGCTTTGTCCCAAGTCAAACCTCTCTAACTTTGATCAAGTTTATAGAAAAATGCACCAAAATCTAGAATATCAAACTAGTTCCATTAAA
TTCTCCATGAAATATATTTTGATAATGCATTTATTGAACTTGTAGATGATAATATATTTTTTCTAAAAACTTGATCAAAGTTAGAGAAGTTTGACTTANG
ACAAAGCTAAAGTGAACA
dot-bracket secondary structure
......((((.(((((((((..(((((((((.(((((((((((((((((((((.((((((((.........(((((.(((((((((.((.(((.......
........)))...)).)))))))...............)).)))))..........)))))))).))))))))))))))))))))).)))))))))..)
)))))))).)))).....
SIMILARITIES| miRBase ssp-MIR437a: 2e-96 PMRD sof-miR437: 1e-45 microPC miR437: 2e-96 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ssp-MIR437a from miRBase (MNEST042475) |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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