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ABOUT THIS RECORD
ID:
MNEST002541
species:
Saccharum officinarum
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTT
miRNA*
GGTCAAGAAAGCTGTGGGAAG
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTCTTCAAGTCCATGCCATGCCT
TTCCACAGCTTTCTTGAACTT
CTTCTCCTCCCCCTTATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCATCTCC
GAAGAA
GGTCAAGAAAGCTGTGGGAAG
AAATGACATAACAAGGACTC
dot-bracket secondary structure
.......((((((((.(((..((
(((((((((((((((((.(((
((((....................................................
))))))
).)))))))))))))))))))
..))).))).....))))).
SIMILARITIES
miRBase
sbi-MIR396c
:
3e-20
PMRD
sbi-miR396c
:
3e-20
microPC
miR396
:
0.0000001
UniProt
no hits
RFAM
MIR396: 0.0000000000006
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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