miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002547
species: Saccharum officinarum
miRNA family: MIR827
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAGATGACCATCAGCAAACA

miRNA*
 TTTTGTTGGTGGTCATTTAACC

mismatches: 0
bulges: 1
View larger
pre-miRNA
 TAATGCAGCTCCGAACCTGTTTTGTTGGTGGTCATTTAACCATGCTTCCATCGATGGGTGCATGGTTTATGGCAGAGTGTGATGCCATGAACTCATCATG
GTCATGCATGTGTGCATGGTTAGATGACCATCAGCAAACATGTTCACGAGGCATGC

dot-bracket secondary structure
..((((..(((.((((.(((((.((((((((((((((((((((((..((((.(((((((.((((((.(((......)))....)))))).))))))))))
)............))))))))))))))))))))))))))).))))..)))))))..


SIMILARITIES
miRBase ssp-MIR827: 1e-69

PMRD osa-miR827b: 0.0000005

microPC miR827: 3e-64		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;