ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGACGAGGCAGAGCATG mismatches: 3 bulges: 0 |
pre-miRNA
TGTTTGATTGGAGACAGGGACGAGGCAGAGCATGGGATGGGGCCATCAACAAAATTTCCAATTTCCGTTTGCTTGCTCACAAAACGAAGGTGCCTGCCTC
CCTGGTGATGGCCTGACCTGAGAGGGCTGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCACCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTT
dot-bracket secondary structure
.........((((.((((((.(((((((.(((.(((.(((((....((((((.....(((....((....(((.((((.((...((.((((....)))).
..)).)).((((((.........)))))).))))..))).)).....)))..)))))).)))))))).))).))))))).)))))).))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTTTGATTGGAGACAGGGACGAGGCAGAGCATGGGATGGGGCCATCAACAAAATTTCCAATTTCCGTTTGCTTGCTCACAAAACGAAGGTGCCTGCCTC
CCTGGTGATGGCCTGACCTGAGAGGGCTGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCACCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTT
dot-bracket secondary structure
.........((((.((((((.(((((((.(((.(((.(((((....((((((.....(((....((....(((.((((.((...((.((((....)))).
..)).)).((((((.........)))))).))))..))).)).....)))..)))))).)))))))).))).))))))).)))))).))))........
SIMILARITIES| miRBase sof-MIR408d: 9e-111 PMRD sof-miR408d: 9e-111 microPC miR408: 0.00004 | UniProt no hits RFAM MIR408: 0.0000000000002 | most similar mature miRNAs |
Identical with: sof-MIR408d from miRBase (MNEST042465) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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