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ABOUT THIS RECORD
ID:
MNEST002552
species:
Saccharum officinarum
miRNA family:
MIRf905
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCCTGTCACATCGGATGTTT
miRNA*
ATGTCTGATGTGTCAGGGACT
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATACCCCCTCCTAAACTTTAG
TCCCTGTCACATCGGATGTTT
GGACACTAATTTGGAGTACTAAGCAGACTAATTAGGCTTAATAGATTCGTCTCGCAAA
TTAGTCTCCATCTGTGCAATGAGTTTTATAATTAGCTCATGTTTGGTCCTTGTAGTTAGCATCCGA
ATGTCTGATGTGTCAGGGACT
AAACTTCAGTCCC
TGGAT
dot-bracket secondary structure
................(((((
((((((.((((((((((((((
(((..((((((..(((.(((((((((((((((((((((((..(((....))).(((..
..............)))..))))))...))))))).)).)))))))).)))..))))))..)))))
)))))))))))).))))))))
))).(((((...)
)))).
SIMILARITIES
miRBase
osa-MIR445h
:
0.000000003
PMRD
osa-miRf10779-akr
:
0.00000000004
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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