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ABOUT THIS RECORD
ID:
MNEST002561
species:
Saccharum officinarum
miRNA family:
MIRf75
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCGAGACAAATCTATTAAGT
miRNA*
TTAATAGATTCGTCTCGCTAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
CCAATTAGGAGTATTAAATATGGGCTAATTACAAAACTAATTACACAGGTTGAGGCTAATT
TGCGAGACAAATCTATTAAGT
CTAATAACTCCATGATTT
GCGAGACGAATCTATTAAGTCTAGTAAGTCCATGATTTTGGCAATGTTGTGCTACAATAAACATTTGCTAGTTAGAAATTAATTAGGC
TTAATAGATTCG
TCTCGCTAA
TTAGTCTACCCATGTGCAATTAGTTTTATAATTAGCTCATATTTATTCTTTCCAATGC
dot-bracket secondary structure
.......((((...(((((((((((((((((.((((((((((.((((((...(((((((((
.(((((((.((((((((((((
((((((((..((((((((
((.((((...........)))).)))))).))))....((((((...(((..........))).))))))))))........))))))
)))))))))).)
)))))).))
)))))))..)).)))).)))))))))).)))))))))))))))))....)))).....
SIMILARITIES
miRBase
osa-MIR2124e
:
0.000000000000001
PMRD
osa-miR442
:
0.0000000000002
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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