ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAAGGAGCTCTT miRNA* AGCTCCTATCATTCCAATGA mismatches: 4 bulges: 0 |
pre-miRNA
CGTTTCTTGACCATGTAGGCCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTGGTTCCGCTGCTCGTTCATG
GTTCCCACTATCCTATCTCATCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCACGGTGGTCGTCTTTGAGATAGGCTTGTG
GTTTGCATGACCGAAGAGCTGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAAGGAGCTCTTGCATCTGATCCATCCATCCCCCCATGTTTGCTTGC
TTGT
dot-bracket secondary structure
...........((.((((((..((((..((((((.((.(((((((((((.(((.(((((.((..(((((...(((.(((((((...((.((((..(((((
....((((...(((((((((..(((..((((.((..((.(((((.........)))))..))...))...)))).....)))...)))))))))...)))
)....))))).....)))).)))))).))).))).)))))..)).))))).))).)))))))).))).)).))))))..))))...........))))))
.)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGTTTCTTGACCATGTAGGCCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTGGTTCCGCTGCTCGTTCATG
GTTCCCACTATCCTATCTCATCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCACGGTGGTCGTCTTTGAGATAGGCTTGTG
GTTTGCATGACCGAAGAGCTGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAAGGAGCTCTTGCATCTGATCCATCCATCCCCCCATGTTTGCTTGC
TTGT
dot-bracket secondary structure
...........((.((((((..((((..((((((.((.(((((((((((.(((.(((((.((..(((((...(((.(((((((...((.((((..(((((
....((((...(((((((((..(((..((((.((..((.(((((.........)))))..))...))...)))).....)))...)))))))))...)))
)....))))).....)))).)))))).))).))).)))))..)).))))).))).)))))))).))).)).))))))..))))...........))))))
.)).
SIMILARITIES| miRBase sof-MIR159e: 2e-149 PMRD sof-miR159e: 2e-149 microPC miR319: 1e-18 | UniProt no hits RFAM MIR159: 2e-61 | most similar mature miRNAs |
Identical with: sof-miR159e from PMRD (MNEST054632) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
