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ABOUT THIS RECORD

ID: MNEST002567
species: Saccharum officinarum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGGACGGAGGGAGTACA

miRNA*
 TACTCCCTCTGCCCCAAAATA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TTGTTCCTGTACTCCCTCTGCCCCAAAATAAATGTACATATCTCATTTATCGAAGAGTAACTTTTTAAGCTTGACCAAATATACACACAAAAGTACTGAT
GTTTACGATGTGTAATAAGCATCATTACATTTATCATGGAATACCCTTTTATAGTAAACTTATTTCAAGATACAAATATTGATACAATTCTCTATATAGC
TAGTCAAACTTAAAAAAAAGTTTGACCTCGAAAAGCGAGATATGCATTTATTTTGGGACGGAGGGAGTACACTACAA

dot-bracket secondary structure
.(((...(((((((((((((.((((((((((((((..(((((((.(((.((((.....(((((((((((.(((((....((((.........(((.((((
((((..(((((.......)))))........((((.(((((((.................))))))).)))).)))))))).))).........))))..
..))))).))))...))))))).....)))).))).))))))))))))))))))))).)))))))))))))..))).


SIMILARITIES
miRBase osa-MIR1862e: 0.00001

PMRD osa-miRf10569-akr: 0.000004

microPC miR1439: 0.00001		UniProt no hits

RFAM MIR806: 0.00002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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