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ABOUT THIS RECORD

ID: MNEST002568
species: Saccharum officinarum
miRNA family: MIR1436
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATATTTTGGGACGGAGGGAGT

miRNA*
 TCCATCTGTCCCAAATTATCT

mismatches: 2
bulges: 0
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pre-miRNA
 GTGTTTATGCTCTACTCCATCTGTCCCAAATTATCTTTCGCTTTGGGTTCCACGCCGCAAGTTTGACTCGATTTATAGAAAATACGTGTAACATTTGTAT
CTCTAAATAAATTTATTAAAAAACTAGATTCAAAGATCTTTCCAATGATACTAATTTTATATCATAAATATTAATATTTTTAAATATATTTTATCAAAGT
TTCTCAGAAAGCGAAAACGACATATATTTTGGGACAGATATTTTGGGACGGAGGGAGTACATATATATTA

dot-bracket secondary structure
((((.((((...((((((.(((((((((((.(((((.((.(((((((((..((.......))..))))))).......((((((.((((....(((((..
.(((....((((((..(((((...((.(((.((((((.((....((((((.((....)))))))).......)).)))))).))).)))))))...))))
))...)))..)))))....)))).)))))))))).))))).))))))))))).)))))))))).))))..


SIMILARITIES
miRBase osa-MIR1862e: 0.0002

PMRD osa-miRf10603-akr: 0.00001

microPC miR1439: 0.00006		UniProt no hits

RFAM MIR1122: 0.000000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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