ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGTCTCAAGCTTGCTGCC miRNA* TGACAAGCTAGAGGCAGCAAC mismatches: 2 bulges: 0 |
pre-miRNA
ATTGATGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCA
GTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAA
dot-bracket secondary structure
......((((((((.((((.((((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).))))))
))))))))))).)))))).)))).)))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTGATGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCA
GTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAA
dot-bracket secondary structure
......((((((((.((((.((((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).))))))
))))))))))).)))))).)))).)))))))).....
SIMILARITIES| miRBase ssp-MIR444c: 1e-56 PMRD pvi-miR444: 1e-53 microPC miR444: 8e-55 | UniProt sp|Q6EP49|MAD27_ORYSJ: 0.00006 RFAM MIR444: 2e-62 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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