ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGGTTTTCTTGCAAGTTG miRNA* ACTTGCAAGAAAGTCACAAAA mismatches: 1 bulges: 0 |
pre-miRNA
GCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGACATACTTGTGGTTTTCTTGCAAGTTGTGC
AGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTG
dot-bracket secondary structure
......((.((((.(((((.((((((((.((((((((.(((((((((((((((((((...................))))))))))))))))))).))))
)))).)))))))).))))).)))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGACATACTTGTGGTTTTCTTGCAAGTTGTGC
AGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTG
dot-bracket secondary structure
......((.((((.(((((.((((((((.((((((((.(((((((((((((((((((...................))))))))))))))))))).))))
)))).)))))))).))))).)))).)).....
SIMILARITIES| miRBase ssp-MIR444a: 8e-55 PMRD pvi-miR444: 1e-19 microPC miR444: 1e-53 | UniProt no hits RFAM MIR444: 2e-40 | most similar mature miRNAs |
Identical with: miR444 from microPC (MNEST045712) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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