ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGCCTCAAGCTT miRNA* GCATGAGGCAGGAACTGCATT mismatches: 2 bulges: 0 |
pre-miRNA
GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTG
TTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((((((((((((((.....(((....))).....))))))))))))))))))).)))))))).
)))))))).))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTG
TTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((((((((((((((.....(((....))).....))))))))))))))))))).)))))))).
)))))))).))))).))))..
SIMILARITIES| miRBase ssp-MIR444b: 4e-53 PMRD osa-miR444f: 2e-18 microPC miR444: 1e-44 | UniProt no hits RFAM MIR444: 2e-46 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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