miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002578
species: Saccharum officinarum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCCCTCCGTCCATAAAAA

miRNA*
 TTGTTGGACGGAGGGAGTACC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GAACTACTCCCTCCGTCCATAAAAACATGCAATTCTCGCTTTTCGAGAAGTCAAACAGTTTGAACTTTGACTAAATTTATATAAAAAAATACTAATATTT
ATAATACAAAATAAGTATCATTAGATTAGTTATAGAATATATTTTTTTAATAAATATATTTGGAGACATAAATGTTAATACTATTTACTATAAACTTGGT
CAAACTTGAGTCAGTTTGACTGGCACGCTTCCCATAATTGCTTGTTTTGTTGGACGGAGGGAGTACCA

dot-bracket secondary structure
....(((((((((((((((..((((((.((((((((((.....)))))((((((((...((.((.(((((((((.(((((((((((((((((((((....
((.((((.......)))).))...))))))..........))))))))).((((((((((....((((....)))))))).)))))).)))))).)))))
)))).)).))...))))))))((........))...))))).))))))..)))))))))))))))...


SIMILARITIES
miRBase ssp-MIR1128: 0.0000009

PMRD bsy-miR1122: 0.00005

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;