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ABOUT THIS RECORD

ID: MNEST002585
species: Saccharum officinarum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGGGACGGAGGGAGTAAA

miRNA*
TAATCCATTCGTTCCAAAATG

mismatches: 3
bulges: 0

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pre-miRNA
ATATAGATATAGATATAGATATAATCCATTCGTTCCAAAATGGATGACACTTTTGACTTTTAGATATCACGTTTGACCATTTGTCTTATTCAATTTTTTG
TGCANATAATAAAATAAACAAGTCTTCATTATAAAGTATCTCTAATGATTAAAATAGTCATAATTAANATTTTTGAATATGACAAACAGTCCAACAAGAT
GTGTAAAAGTAAAAAAACGTTATGTATTTTGGGACGGAGGGAGTAAATATTATAGAGTATAGATA


dot-bracket secondary structure
.((((..(((....)))..)))).(((.((((((((((((((.(((((..((((.(((((((.(((((..(((.(((..((((((.(((((((..(((((
(.......)))))).....((((.((.((((..............((((((...)))))))))).)).))))))))))).))))))..))).)))..)))
)).)))))))..))))..))))).)))))))))))))).)))....(((((....))))).....



SIMILARITIES
miRBase osa-MIR1884a: 0.0002

PMRD osa-miRf10569-akr: 0.00001

microPC miR1439: 0.0002
UniProt no hits

RFAM MIR812: 0.000000004
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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