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ABOUT THIS RECORD
ID:
MNEST002585
species:
Saccharum officinarum
miRNA family:
MIR1439
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTGGGACGGAGGGAGTAAA
miRNA*
TAATCCATTCGTTCCAAAATG
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATATAGATATAGATATAGATA
TAATCCATTCGTTCCAAAATG
GATGACACTTTTGACTTTTAGATATCACGTTTGACCATTTGTCTTATTCAATTTTTTG
TGCANATAATAAAATAAACAAGTCTTCATTATAAAGTATCTCTAATGATTAAAATAGTCATAATTAANATTTTTGAATATGACAAACAGTCCAACAAGAT
GTGTAAAAGTAAAAAAACGTTATGTA
TTTTGGGACGGAGGGAGTAAA
TATTATAGAGTATAGATA
dot-bracket secondary structure
.((((..(((....)))..))
)).(((.((((((((((((((
.(((((..((((.(((((((.(((((..(((.(((..((((((.(((((((..(((((
(.......)))))).....((((.((.((((..............((((((...)))))))))).)).))))))))))).))))))..))).)))..)))
)).)))))))..))))..))))).))
)))))))))))).)))....(
((((....))))).....
SIMILARITIES
miRBase
osa-MIR1884a
:
0.0002
PMRD
osa-miRf10569-akr
:
0.00001
microPC
miR1439
:
0.0002
UniProt
no hits
RFAM
MIR812: 0.000000004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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