miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002594
species: Saruma henryi
miRNA family: miR172a
source: miRNEST

Taxonomy by NCBI:
Saruma henryi Saruma Aristolochiaceae Piperales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGGCATCATCAAGATTCACA

miRNA*
 GGAATCTTGATGATGCTGCAT

mismatches: 1
bulges: 0
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pre-miRNA
 AAAGATCTCTGTAGAGGGAAGCACAGTCACTGTTTGCGGGTGTGGCATCATCAAGATTCACAAAACTTTGAAAGGGGGTGTTGAGTGGCAGTGCATGAGAT
GAGGTGGTTGTGGATGGTGGCCCCTCACAGTACCCCCTCGAGATGGGAATCTTGATGATGCTGCATCGGCAATAAGTGACTACTTTTTTAAGCTGCAAAC
CAA

dot-bracket secondary structure
)........(((((..(((((...(((((((..((((.(((((((((((((((((((((.((....(((((..(((((((.((((.(((.((.(((((...
.......))))).))....))).))))...)))))))))))).)).))))))))))))))))))))).))))..)))))))...)))))...)))))...
...


SIMILARITIES
miRBase ptc-MIR172e: 2.0E-10

PMRD ptc-miRf11917-akr: 2.0E-10

microPC miR172: 4.0E-5		UniProt no hits

RFAM 2mir-172: 3.0E-9		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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