ABOUT THIS RECORDspecies: Solanum habrochaites
miRNA family: MIRf469
source: miRNEST
Taxonomy by NCBI:
Solanum habrochaites Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGTAATCCCAGCACTTTGA miRNA* GAAGTGGCTGGATTGCTTGAG mismatches: 4 bulges: 2 |
pre-miRNA
GGGGCCTGTAATCCCAGCACTTTGAGAGGCCGAAGTGGCTGGATTGCTTGAG
dot-bracket secondary structure
)......(((((((.(((((((((......)))))).)))))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGCCTGTAATCCCAGCACTTTGAGAGGCCGAAGTGGCTGGATTGCTTGAG
dot-bracket secondary structure
)......(((((((.(((((((((......)))))).)))))))))).....
SIMILARITIES| miRBase mml-mir-619: 0.0005 PMRD ptc-miRf10804-akr: 2.0E-6 microPC no hits | UniProt no hits RFAM PMetazoa_SRP: 2.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
