miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

ABOUT THIS RECORD

ID: MNEST002628
species: Solanum habrochaites
miRNA family: MIRf469
source: miRNEST

Taxonomy by NCBI:
Solanum habrochaites Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CCTGTAATCCCAGCACTTTGA

miRNA*
GAAGTGGCTGGATTGCTTGAG

mismatches: 4
bulges: 2

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pre-miRNA
GGGCCTGTAATCCCAGCACTTTGAGAGGCCGAAGTGGCTGGATTGCTTGAG

dot-bracket secondary structure
......(((((((.(((((((((......)))))).)))))))))).....

SIMILARITIES

miRBase mml-mir-619: 0.0005

PMRD ptc-miRf10804-akr: 0.000002

microPC no hits

UniProt no hits

RFAM Metazoa_SRP: 0.0000000000002

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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