ABOUT THIS RECORDspecies: Solanum habrochaites
miRNA family: MIRf469
source: miRNEST
Taxonomy by NCBI:
Solanum habrochaites Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGTAATCCCAGCACTTTGA miRNA* GAAGTGGCTGGATTGCTTGAG mismatches: 4 bulges: 2 |
pre-miRNA
GGGCCTGTAATCCCAGCACTTTGAGAGGCCGAAGTGGCTGGATTGCTTGAG
dot-bracket secondary structure
......(((((((.(((((((((......)))))).)))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGGCCTGTAATCCCAGCACTTTGAGAGGCCGAAGTGGCTGGATTGCTTGAG
dot-bracket secondary structure
......(((((((.(((((((((......)))))).)))))))))).....
SIMILARITIES| miRBase mml-mir-619: 0.0005 PMRD ptc-miRf10804-akr: 0.000002 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.0000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
