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ABOUT THIS RECORD

ID: MNEST002642
species: Solanum lycopersicum
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACGCTCTATCTGTCACA

mismatches: 2
bulges: 1
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pre-miRNA
 CGCGATGCGTATACGTAAATACAAGGTAAATTAAGGATGGGTGACAGAAGAGAGTGAGCACACATGGTTCTTTCATGGATTATTCCCCATGTTTAAAAGC
TCTGCGTGCTCACGCTCTATCTGTCACACACCAAAACTCTTTTATCTTTTTTACATATGTTATAAG

dot-bracket secondary structure
......((((((..(((((...((((((((...((..(((((((((((((((.((((((((.((.((((.((.(((((........)))))...)).)))
).)).)))))))).)))).))))))))...)))...))..)))))))).)))))))))))......


SIMILARITIES
miRBase tcc-MIR156d: 0.0000000001

PMRD vvi-miR156c: 0.000000002

microPC miR156: 0.00000003		UniProt no hits

RFAM mir-156: 0.00000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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