ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATCATCATCATCATCATAA miRNA* GTGGTCGTGATGGTCATGTTT mismatches: 4 bulges: 0 |
pre-miRNA
CTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCC
TTATGCTAATGTTGATTCCAATCTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGT
dot-bracket secondary structure
......((((((((.((((((((.(((((.......((((.((.(((....((((......)))).((((((...((((((....))))))(((((.(((
....((..((((.(((....))).))))......)).))).)))))..))))))))).)).))))......))))).)))))))).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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CTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCC
TTATGCTAATGTTGATTCCAATCTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGT
dot-bracket secondary structure
......((((((((.((((((((.(((((.......((((.((.(((....((((......)))).((((((...((((((....))))))(((((.(((
....((..((((.(((....))).))))......)).))).)))))..))))))))).)).))))......))))).)))))))).)))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
