ABOUT THIS RECORDspecies: Sorghum propinquum
miRNA family: miR156a
source: miRNEST
Taxonomy by NCBI:
Sorghum propinquum Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCCTTCTCTCTCTGTCTA miRNA* GGCAAGGAAGGAGGCCGAAAAT mismatches: 5 bulges: 1 |
pre-miRNA
TTGTGGTCCGTGGGCAAGGAAGGAGGCCGAAAATTGCATCAATGCCCCTCCCTTCTCTCTCTGTCTATACCCCCCT
dot-bracket secondary structure
....(((..(((((((.(((.(((((..((.....(((....)))...)).))))).))).)))))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTGTGGTCCGTGGGCAAGGAAGGAGGCCGAAAATTGCATCAATGCCCCTCCCTTCTCTCTCTGTCTATACCCCCCT
dot-bracket secondary structure
....(((..(((((((.(((.(((((..((.....(((....)))...)).))))).))).)))))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
