ABOUT THIS RECORDspecies: Thellungiella halophila
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATTCCTTCTTTG miRNA* AAGCGTGGATTCTTTCTGGATG mismatches: 3 bulges: 1 |
pre-miRNA
CTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCG
CTGCTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGA
dot-bracket secondary structure
......(((......((((((((((...(((.(((((((((((...(((((..(((.......))).((((((..((((.....)))))))))).....)
))))..))))))))))).)))..))))))))))......))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCG
CTGCTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGA
dot-bracket secondary structure
......(((......((((((((((...(((.(((((((((((...(((((..(((.......))).((((((..((((.....)))))))))).....)
))))..))))))))))).)))..))))))))))......))).....
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 0.00003 microPC no hits | UniProt sp|P0CH32|UBQ4_ARATH: 2e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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