ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIRf57
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTAAAGATGTCAACTAATTG miRNA* ATTTTAACATCTCTACTTC mismatches: 2 bulges: 2 |
pre-miRNA
TCTCACAAAATATATCTTCATTTAGATGTTTGGTAAAGATGTCAACTAATTGATACAAAGTATTCACAAACTCAATTTTAACATCTCTACTTCACACATC
ATTGGAATGTAAGCTTACTCA
dot-bracket secondary structure
...............((((((((.(((((..((((.((((((.((..((((((..................)))))))).)))))).))))....)))))
....))))).)))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCTCACAAAATATATCTTCATTTAGATGTTTGGTAAAGATGTCAACTAATTGATACAAAGTATTCACAAACTCAATTTTAACATCTCTACTTCACACATC
ATTGGAATGTAAGCTTACTCA
dot-bracket secondary structure
...............((((((((.(((((..((((.((((((.((..((((((..................)))))))).)))))).))))....)))))
....))))).)))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
