ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: miR166m
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGGCTGGCTCGATG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 2 bulges: 2 |
pre-miRNA
TTTTGTCTTTGAGAGGAATGTTGGCTGGCTCGATGCGGGGGGCTTTGAGAGTGATCAAAGTGAAAGGTATCGGACCAGGCTTCATTCCCCTCAAACATTT
T
dot-bracket secondary structure
....((.((((((.((((((..((((((.(((((((.....(((((((......))))))).....))))))).))).))).)))))).)))))).))..
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTTGTCTTTGAGAGGAATGTTGGCTGGCTCGATGCGGGGGGCTTTGAGAGTGATCAAAGTGAAAGGTATCGGACCAGGCTTCATTCCCCTCAAACATTT
T
dot-bracket secondary structure
....((.((((((.((((((..((((((.(((((((.....(((((((......))))))).....))))))).))).))).)))))).)))))).))..
.
SIMILARITIES| miRBase ptc-MIR166f: 0.000000001 PMRD ptc-miR166f: 0.000000001 microPC miR166: 0.00002 | UniProt no hits RFAM mir-166: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
