ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGAAGTTTGATCCAAGA mismatches: 4 bulges: 0 |
pre-miRNA
TGAGGGTGTATGGAATGAAGTTTGATCCAAGATCCCTCCTTCTCCATAAGTTCTTATCTGATAATTACTTAAGGGATTGATCATTGATCTCGGACCAGGCT
TCATTCCTCACACCAT
dot-bracket secondary structure
)...(((((..(((((((((((((.(((.(((((..((..((.((.(((((..((((...))))..))))).))))..)).....))))).))).))))))
)))))))..)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGAGGGTGTATGGAATGAAGTTTGATCCAAGATCCCTCCTTCTCCATAAGTTCTTATCTGATAATTACTTAAGGGATTGATCATTGATCTCGGACCAGGCT
TCATTCCTCACACCAT
dot-bracket secondary structure
)...(((((..(((((((((((((.(((.(((((..((..((.((.(((((..((((...))))..))))).))))..)).....))))).))).))))))
)))))))..)))))..
SIMILARITIES| miRBase tcc-MIR166c: 2.0E-61 PMRD osa-miR166g: 4.0E-10 microPC miR166: 1.0E-6 | UniProt no hits RFAM 6mir-166: 2.0E-9 | most similar mature miRNAs |
Identical with: tcc-MIR166c from miRBase (MNEST041096) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
