ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIRf445
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGATGCAGCATCATCAAGAT miRNA* CTTGATGATGCTACACCCGCA mismatches: 4 bulges: 0 |
pre-miRNA
AAAGGGTCTTTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTTCCAAACAACTTTGGCATAAAGGAGAAGGGAAAAGAAAGGGGA
AGGGGAGAAAAAAAGAAGAGAGTTTGTATTATCCATCACCACCACCGTGCATTTGCATGTGAATCTTGATGATGCTACACCCGCAAACAACGACTGTCAA
TCTATCTATC
dot-bracket secondary structure
...((((...(((.(((((((((..((((...((.((((((((((((((((((..(((((......(((((...)))))......))))).))..((.((
.(((......(((.........)))......))).))....))..(((((....))))).)))))))))))))))).))...))))..))))))))))))
...))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAAGGGTCTTTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTTCCAAACAACTTTGGCATAAAGGAGAAGGGAAAAGAAAGGGGA
AGGGGAGAAAAAAAGAAGAGAGTTTGTATTATCCATCACCACCACCGTGCATTTGCATGTGAATCTTGATGATGCTACACCCGCAAACAACGACTGTCAA
TCTATCTATC
dot-bracket secondary structure
...((((...(((.(((((((((..((((...((.((((((((((((((((((..(((((......(((((...)))))......))))).))..((.((
.(((......(((.........)))......))).))....))..(((((....))))).)))))))))))))))).))...))))..))))))))))))
...))))...
SIMILARITIES| miRBase tcc-MIR172e: 2e-38 PMRD gma-miR172b: 5e-20 microPC miR172: 0.000003 | UniProt no hits RFAM mir-172: 9e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
