ABOUT THIS RECORDspecies: Trifolium pratense
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTCCCAAAATATAAGCA miRNA* CTTATATTTTAGGACGGAGGG mismatches: 1 bulges: 0 |
pre-miRNA
TCAAACATACTACTCCGTCCCAAAATATAAGCAAAAGGAGGTCAACAAAAGTGAATGTATCTGGACTAAATTTTAAACCAAATACATCAATTTTCATTGAC
CAATTTTTGCTTATATTTTAGGACGGAGGGAGTATTAT
dot-bracket secondary structure
).....(((((.((((((((.((((((((((((((((..((((((.((((.(((.(((((.(((.............))).)))))))).))))..)))))
)..)))))))))))))))).))))))))..)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCAAACATACTACTCCGTCCCAAAATATAAGCAAAAGGAGGTCAACAAAAGTGAATGTATCTGGACTAAATTTTAAACCAAATACATCAATTTTCATTGAC
CAATTTTTGCTTATATTTTAGGACGGAGGGAGTATTAT
dot-bracket secondary structure
).....(((((.((((((((.((((((((((((((((..((((((.((((.(((.(((((.(((.............))).)))))))).))))..)))))
)..)))))))))))))))).))))))))..)))))...
SIMILARITIES| miRBase no hits PMRD osa-miRf10603-akr: 7.0E-6 microPC miR1439: 3.0E-5 | UniProt no hits RFAM 2MIR1122: 6.0E-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
