ABOUT THIS RECORDspecies: Trifolium pratense
miRNA family: MIRf375
source: miRNEST
Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCAGCAGCAGCATCATCAAC miRNA* TGATTGTGCTGCTTCTGCTAC mismatches: 4 bulges: 0 |
pre-miRNA
TCAGACTTAGCAGCAGCAGCAGCATCATCAACTTTGGGCTGATCTGGTTTGGAAGCTGGTGGAGTATCACCCTCATATTTATGCAGATAATCAGCAGCCT
TATCAACATACTGTCCTAATCCCTTCTGATCATCCAATTTAGCATACTGACCAACTGCATCTAGAAGATCACCTGCAGCCTCTGCTGTCTTGTCTTTGTC
AACATCTTTCCCGAAACCTGATTGTGCTGCTTCTGCTACAATCTTTG
dot-bracket secondary structure
...........(((((.((((((((.((((..((((((..(((.(((((.....((((.((((.((((.....(((....)))..))))(((((.((...
.....(((...)))........)).)))))..))))...)))).....)))))..((((...(((((((.....((((...)))).))))..))).)).)
)..)))...))))))...)))).)))))))).)))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCAGACTTAGCAGCAGCAGCAGCATCATCAACTTTGGGCTGATCTGGTTTGGAAGCTGGTGGAGTATCACCCTCATATTTATGCAGATAATCAGCAGCCT
TATCAACATACTGTCCTAATCCCTTCTGATCATCCAATTTAGCATACTGACCAACTGCATCTAGAAGATCACCTGCAGCCTCTGCTGTCTTGTCTTTGTC
AACATCTTTCCCGAAACCTGATTGTGCTGCTTCTGCTACAATCTTTG
dot-bracket secondary structure
...........(((((.((((((((.((((..((((((..(((.(((((.....((((.((((.((((.....(((....)))..))))(((((.((...
.....(((...)))........)).)))))..))))...)))).....)))))..((((...(((((((.....((((...)))).))))..))).)).)
)..)))...))))))...)))).)))))))).)))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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