ABOUT THIS RECORDspecies: Triphysaria pusilla
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGTTGAGTGCGGCGTTGATG miRNA* GACGGCGTCGATTTCGACGACG mismatches: 3 bulges: 1 |
pre-miRNA
GCTTTGTGTAGACGGCGTCGATTTCGACGACGGTTAGAGTGTGGTTGGCTATGGCGAAGAAGAGCTCGTCGTTGAGTGCGGCGTTGATGATTCTTAGTA
dot-bracket secondary structure
(((.....((..((((((((..(((((((((((((....(((.((.....)).)))......))).))))))))))..)))))))).))......))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCTTTGTGTAGACGGCGTCGATTTCGACGACGGTTAGAGTGTGGTTGGCTATGGCGAAGAAGAGCTCGTCGTTGAGTGCGGCGTTGATGATTCTTAGTA
dot-bracket secondary structure
(((.....((..((((((((..(((((((((((((....(((.((.....)).)))......))).))))))))))..)))))))).))......))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5N9X2|LAC4_ORYSJ: 0.000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
