miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002814
species: Tropaeolum majus
miRNA family: MIR869
source: miRNEST

Taxonomy by NCBI:
Tropaeolum majus Tropaeolum Tropaeolaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATGGTTCAATGCGGGTGTTA

miRNA*
 GTTCTGTGTGTAGCTAAGGG

mismatches: 4
bulges: 1
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pre-miRNA
 ATGGTGAAGGCGAAGAATTGTCATGGTTCAATGCGGGTGTTAGAGTTGGTGTAGGGATTGGTCTTGGCATCTGTCTTGGAGTAGGTATAGGAGTCGGATT
ATTTGTTCGTACCTACCAAGCAACCACTAGAAACTTCAAAAGGCGGCTCGGGTGATCACAAATTCTCACCTTGAATACTCCCTTGTGTGTTCCCTGTAAA
TCCAAAAGGTAGCTAACTTCTATCTCTGTTAACTGATAGTTCTGTGTGTAGCTAAGGGTCGTTCGTCAATCCGTTG

dot-bracket secondary structure
((((....((((((((....((.(((((..(((((((..(((.((((((..(((((((.((..(((((((((...(((((.....((((((.((.(((..
((((((...(((((....(((..((................))..))).)))))...))))))))).))...((((((........))))))))))))..
))))).)))).)))))..)).)))))))))))))..))).)))))))..))))).)).)).))))))...))))..


SIMILARITIES
miRBase no hits

PMRD gma-miR869: 0.0000000002

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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