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ABOUT THIS RECORD
ID:
MNEST002817
species:
Vitis shuttleworthii
miRNA family:
MIR2609
source:
miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGTAGTAATAGGTTCTCAGG
miRNA*
TGAGGATAAGGTTGATTCAAT
mismatches:
4
bulges:
2
View larger
pre-miRNA
AAGATTCTTGCC
TGAGGATAAGGTTGATTCAAT
TAAGGGCCTTGCTCTCACAGCTGATGGAAATGGTGCAGTGTTTGATGTAGCAACTGAAGACCTGGAC
GCATTTCTCGCTGGTCAGGAGAATGCAGCTAATGTGAGCTTAGAGGTGTTGAAGGCACTGCCACGCTTGCAAGAAAGAGACCAGTCAAGAGGGGGACGAT
TTGGAGGTGGTGGCCGAGGCGGTGGCTTTGGGGGAAGAGGTGG
TGGTAGTAATAGGTTCTCAGG
GGGAAGAGG
dot-bracket secondary structure
....(((((.((
(((((((...((((..(((..
.....(((((.((((((.(((((..(((((((((.(((.((((...((....))...))))))).))
.)))))))((((((((..(((..((((.....))))..)))...(((((.....)))))(((((.(((.((((.......((.........))......)
)))))))))))))))..)))).))))).))))))..)))))..
)))...))))..)))))))))
)))))....
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q41382|RH7_SPIOL: 0.000000000000009
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record