ABOUT THIS RECORDspecies: Vitis shuttleworthii
miRNA family: miR172c
source: miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGCATCATCAAGATTCACA miRNA* GGAATCTTGATGATGCTGCAG mismatches: 2 bulges: 0 |
pre-miRNA
TTCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCA
CACTCCGATGGCTCTTTGATATGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTAT
dot-bracket secondary structure
)..........(((((....((((...((.((((((((((((((((.((.((...((((.(((...((.((((..((.((.((((.....)))))).))..
)))).)).))).))))..)).)).)))))))))))))))).))...))))....))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCA
CACTCCGATGGCTCTTTGATATGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTAT
dot-bracket secondary structure
)..........(((((....((((...((.((((((((((((((((.((.((...((((.(((...((.((((..((.((.((((.....)))))).))..
)))).)).))).))))..)).)).)))))))))))))))).))...))))....))))).........
SIMILARITIES| miRBase vvi-MIR172c: 3.0E-67 PMRD vvi-miR172c: 3.0E-67 microPC miR172: 8.0E-6 | UniProt no hits RFAM 2mir-172: 3.0E-67 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
