ABOUT THIS RECORDspecies: Vitis shuttleworthii
miRNA family: miR394a-3p
source: miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTGGACTCTCTTTGTAAA miRNA* GACAAAGGGTTTCTCACAGAG mismatches: 4 bulges: 0 |
pre-miRNA
TTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTG
GGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACC
dot-bracket secondary structure
.....((((..((((((.((((((((..(((.(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))
))))...))))))..))))))))).)))..)))))))).))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTG
GGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACC
dot-bracket secondary structure
.....((((..((((((.((((((((..(((.(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))
))))...))))))..))))))))).)))..)))))))).))))))..))))....
SIMILARITIES| miRBase vvi-MIR394b: 1e-47 PMRD vvi-miR394b: 1e-47 microPC miR394: 2e-34 | UniProt no hits RFAM MIR394: 2e-49 | most similar mature miRNAs |
Identical with: vvi-miR394b from PMRD (MNEST054852) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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