ABOUT THIS RECORDspecies: Vitis shuttleworthii
miRNA family: miR394a-3p
source: miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTGGACTCTCTTTGTAAA miRNA* GACAAAGGGTTTCTCACAGAG mismatches: 4 bulges: 0 |
pre-miRNA
CTTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTG
GGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACC
dot-bracket secondary structure
).....((((..((((((.((((((((..(((.(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))
))))...))))))..))))))))).)))..)))))))).))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTG
GGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACC
dot-bracket secondary structure
).....((((..((((((.((((((((..(((.(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))
))))...))))))..))))))))).)))..)))))))).))))))..))))....
SIMILARITIES| miRBase vvi-MIR394b: 1.0E-47 PMRD vvi-miR394b: 1.0E-47 microPC miR394: 2.0E-34 | UniProt no hits RFAM 4MIR394: 2.0E-49 | most similar mature miRNAs |
Identical with: vvi-miR394b from PMRD (MNEST054852), miR394 from microPC , vvi-MIR394b from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
