ABOUT THIS RECORDspecies: Zingiber officinale
miRNA family: MIRf345
source: miRNEST
Taxonomy by NCBI:
Zingiber officinale Zingiber Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCAAAGGCCTCTGCCCTTC miRNA* TGGGCAGAGCTTTTGGTTTT mismatches: 4 bulges: 1 |
pre-miRNA
TGGCTAGTGATTGTGAGGCCCCAATTCTTGACTGGAAGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGTGGGCAGAGCTTTT
GGTTTTTCATGTTGTCAAACAGTTGAACAATGAAAATAGATAGC
dot-bracket secondary structure
.((((...........))))((..((((.....)))).))..(((((((((.(((((((......(((((...........))))).)))))))))))))
)))(((((((....((((....))))...)))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGCTAGTGATTGTGAGGCCCCAATTCTTGACTGGAAGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGTGGGCAGAGCTTTT
GGTTTTTCATGTTGTCAAACAGTTGAACAATGAAAATAGATAGC
dot-bracket secondary structure
.((((...........))))((..((((.....)))).))..(((((((((.(((((((......(((((...........))))).)))))))))))))
)))(((((((....((((....))))...)))))))........
SIMILARITIES| miRBase no hits PMRD ptc-miRf12309-akr: 6e-25 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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