ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGCCAAGAATGGCTTGCCG miRNA* AGCAGGCCTTTCTGGCTCTTC mismatches: 2 bulges: 1 |
pre-miRNA
TGCTATCTATTGGCTTGCACGAAGAGATAAAGAGTGGAGCTAGAGCCAAGAATGGCTTGCCGTCGTCAATTTGCTTGCAAAAAGCAACATTTGCTCGGTA
AGCTGTTGCCCAGGCCAGCAGGCCTTTCTGGCTCTTCTTTGCTCTTTGTTTTCTGATGCAAGCCTCTCCGGAG
dot-bracket secondary structure
.....(((...((((((((...(((((((((((((((((..(((((((.(((.(((((((.(((..((((..((((((....(((((...)))))..)))
))).))))....)))..))))))).)))))))))).)))))))))))).)))))..)))))))).....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCTATCTATTGGCTTGCACGAAGAGATAAAGAGTGGAGCTAGAGCCAAGAATGGCTTGCCGTCGTCAATTTGCTTGCAAAAAGCAACATTTGCTCGGTA
AGCTGTTGCCCAGGCCAGCAGGCCTTTCTGGCTCTTCTTTGCTCTTTGTTTTCTGATGCAAGCCTCTCCGGAG
dot-bracket secondary structure
.....(((...((((((((...(((((((((((((((((..(((((((.(((.(((((((.(((..((((..((((((....(((((...)))))..)))
))).))))....)))..))))))).)))))))))).)))))))))))).)))))..)))))))).....))).
SIMILARITIES| miRBase csi-MIR169: 0.00003 PMRD no hits microPC miR169: 6e-47 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045639) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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